Full scan DIA

Summary

Name	Pub date	Instrument	Lab & Co.
Shotgun CID [1]	2003 June	TOF	Goodlett Lab
MSE [2]	2005 Mar.	Q-TOF Ultima	Waters Corporation
AIF [3]	2010 July	Orbitrap	Mann Lab
UDMSE [4]	2013 Dec.	Synapt G2-S	Tenzer Lab

Note

• Pub date: the date the method was publicly released by publisher

• Instrument: initially developped on which instrument

• Lab & Co.: lab or company (the last corresponding author)

Individuals

Shotgun CID

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Reference:

[1]

Shotgun collision-induced dissociation of peptides using a time of flight mass analyzer. 10.1002/pmic.200300362

Full name	Shotgun CID
Authors	Samuel Purvine et al.
Lab & Company	Goodlett Lab
Publication date	2003, June
MS instrument	TOF-MS
Covered mass range	400-1200 m/z

MS^E

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Reference:

[2]

Quantitative proteomic analysis by accurate mass retention time Pairs. 10.1021/ac048455k

Full name	MSE
Authors	Jeffrey C. Silva et al.
Lab & Company	Waters Corporation
Publication date	2005, Mar.
MS instrument	Q-TOF Ultima
Covered mass range	300-2000 m/z

AIF

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Reference:

[3]

Proteomics on an Orbitrap benchtop mass spectrometer using all-ion fragmentation. 10.1074/mcp.M110.001537

Full name	All-Ion Fragmentation
Authors	Tamar Geiger et al.
Lab & Company	Mann Lab
Publication date	2005, Mar.
MS instrument	Exactive (single Orbitrap)
Covered mass range	300-1600 m/z (MS1) and 100-1600 m/z (MS2)

UDMS^E

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Reference:

[4]

Drift time-specific collision energies enable deep-coverage data-independent acquisition proteomics. 10.1038/nmeth.2767

[5]

Label-free quantification in ion mobility-enhanced data-independent acquisition proteomics. 10.1038/nprot.2016.042

Full name	ultra-definition MSE
Authors	Ute Distler et al.
Lab & Company	Tenzer Lab
Publication date	2013, Dec.
MS instrument	Synapt G2-S
Covered mass range	350-2000 m/z

• Increased fragmentation efficiency by optimizing CE values according to TWIMS ion mobility

  • CE 17 eV for ion mobility bins 0-20

  • CE ramp from 17 eV to 45 eV for ion mobility bins 20-110

  • CE ramp from 45 eV to 60 eV for ion mobility bins 110-200